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Journal Articles
For a complete list of articles, click HERE
| M. Mercangoz and F.J. Doyle III, “Real-time Optimization
of the Pulp Mill Benchmark Problem”, Comp. Chem. Eng, in press, 2007. |
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| M. Dokucu and F.J. Doyle III, “Batch-to-Batch Control
of Characteristic Points on the PSD in Experimental Emulsion Polymerization”, AIChE
J., accepted, 2008. |
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| N. Bagheri, S.R. Taylor, K. Meeker, L.R. Petzold, and F.J.
Doyle III, “Synchrony and Entrainment Properties of Robust Circadian
Oscillators”, Roy. Soc. Interface, accepted, 2008. |
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| R. Ramachandran, J.M.-H. Poon, C.F.W. Sanders, T. Glaser,
I.T. Cameron, F.J. Doyle III, C.D. Immanuel, J.D. Litster, F. Stepanek,
and F. Wang, “Experimental Studies on Distributions of Granule Size,
Binder Content and Porosity in Batch Drum Granulation: Inferences on Process
Modelling Requirements and Process Sensitivities”, Powder Tech.,
accepted, 2008. |
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| N. Bagheri, J. Stelling, and F.J. Doyle III, “Circadian
Phase Resetting & Multiple Control Targets”, PLoS Comp.
Biol., accepted, 2008. |
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| M. Percival, H. Zisser, L. Jovanovic, and F.J. Doyle III, “Closed-loop
Control and Advisory Mode Evaluation of an Artificial b-Cell: Use of proportional-Integral-Derivative
Equivalent Model-Based Controllers”, Diabetes Tech. Ther.,
submitted, 2008. |
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| H. Mirsky, R. Gunawan, S. Taylor, J. Stelling, and F.J. Doyle
III, “Noise Propagation and Sensitivity in Mammalian Circadian Clocks”, PLoS
Comp. Biol., submitted, 2008. |
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| T. Glaser, C.F.W. Sanders, F.Y. Wang, I.T. Cameron, J.D.
Litster, J. M.-H. Poon, R. Ramachandran, C. Immanuel, and F.J. Doyle III, “Model
Predictive Control of Continuous Drum Granulation”, J. Process
Control, submitted, 2007. |
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| C.F.W. Sanders, M.J. Hounslow, and F.J. Doyle III, “Identification
of Models for Control of Wet Granulation”, Powder Tech.,
submitted, 2007. |
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| S. Hildebrandt, D. Raden, A.S. Robinson and F.J. Doyle III, “A
top-down approach to mechanistic biological modeling: application to the
single-chain antibody folding pathway”, Biophys. J., submitted,
2007. |
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| S. Hildebrandt, D. Raden, A.S. Robinson and F.J. Doyle III, “Sensitivity
Analysis Discriminates Between Ire1p Activation Regulation Models in S.
cerevisiae”, Nature Molecular Systems Biology, submitted, 2007. |
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| P. Xu, D. Raden, C. Gelmi, S. Hildebrandt, B. Ogunnaike,
F.J. Doyle III, and A.S. Robinson, “Genomic Analysis of the Cellular
Response During Heterologous Protein Expression in Saccharomyces cerevisiae:
using a Novel Probabilistic Framework”, Genome Biology,
submitted, 2006. |
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| E. Dassau, B.A. Buckingham, Q.W. Bequette, and F.J. Doyle
III, “Detection of a Meal Using Continuous Glucose Monitoring: Implications
for an Artificial b-cell”, Diabetes
Care, 31,
295-300, 2008. |
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| S. Taylor, R. Gunawan, L. Petzold, and F.J. Doyle III, “Sensitivity
Measures for Oscillating Systems: Application to Mammalian Circadian Gene
Network”, IEEE
Trans. Aut. Control-Special Issue, 53, 177-188,
2008. |
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| C. Palerm, H. Zisser, L. Jovanovic, and F.J. Doyle III, “A
Run-to-Run Control Strategy to Adjust Basal Insulin Infusion Rates in Type
1 Diabetes”, J.
Process Control, 18, 258-265, 2008. |
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| M.J. Park, F.W. Dahlquist, and F.J. Doyle III, “Simultaneous
high gain and wide dynamic range in a model of bacterial chemotaxis”, IEEE
Systems Biology, 1, 222-229, 2007. |
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| J. Poon, C.I. Immanuel, F.J. Doyle III, and J. Litster, “A
Three-Dimensional Population Balance Model of Granulation with a Mechanistic
Representation of the Nucleation and Aggregate Phenomena”, Chem.
Eng. Sci., 63, 1315-1329, 2008. |
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| M. Pinto, C.I. Immanuel and F.J. Doyle III, “A Two-level
Discretisation Algorithm for the Efficient Solution of Higher-Dimensional
Population Balance Models”, Chem.
Eng. Sci., 63,
1304-1314, 2008. |
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| M. Dokucu, M.-J. Park, and F.J. Doyle III, “Multi-rate
Model Predictive Control of Particle Size Distribution in a Semibatch Emulsion
Copolymerization Reactor”, J.
Process Control, 18, 105-120, 2008. |
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| M. Dokucu, M.-J. Park, and F.J. Doyle III, “Reduced-order
Methodologies for Feedback Control of Particle Size Distribution in Semi-batch
Emulsion Copolymerization”, Chem.
Eng. Sci., 63,
1230-1245, 2008. |
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| A. Liu, D. Welsh, C. Ho, H. Tran, E. Zhang,A. Priest, E.
Buhr, O. Singer, K. Meeker, I. Verma, F.J. Doyle III, J. Takahashi, and
S. Kay, “Intercellular Coupling Confers Robustness against Mutations
in teh SCN Circadian Clock Network”, Cell, 129,
605-616, 2007. |
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| N. Bagheri, J. Stelling and F.J. Doyle III, “Circadian
Phase Entrainment via Nonlinear Model Predictive Control”, Intl.
J. Robust and Nonlinear Control, 17, 1555-1571, 2007. |
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| C. Palerm, H. Zisser, W. Bevier, L. Jovanovic, and F.J. Doyle
III “Prandial Insulin Dosing Using Run-to-Run Control: Application
of Clinical Data and Medical Expertise to Define a Suitable Performance
Metric”, Diabetes
Care, 30, 1131-1136, 2007 . |
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| M.A. Pinto, C.D. Immanuel, and F.J. Doyle III, “A Feasible
Solution Technique for Higher-Dimensional Population Balance Models”, Comp.
Chem. Eng, 31, 1242-1256, 2007. |
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| R. Gunawan and F.J. Doyle III, “Phase Sensitivity Analysis
of Circadian Rhythm Entrainment”, J.
Biol. Rhythms, 22, 180-194, 2007. |
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| R. Kronauer, G. Gunzelmann, H. Van Dongen, F.J. Doyle III,
and E. Klerman, ”Uncovering Physiologic Mechanisms of Circadian
Rhythms and Sleep/Wake Regulation through Mathematical Modeling ”, J.
Biol. Rhythms, 22, 233-245, 2007. |
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| W. Bevier, H. Zisser, C. Palerm, D. Finan, D. Seborg, F.J.
Doyle III, A. Wollitzer, L. Jovanovic, “Calculating the Insulin to
Carbohydrate Ratio Using The Hyperinsulinemic-Euglycemic Clamp – A
Novel Use for a Proven Technique”, Diabetes
Metabolism Research & Reviews, 23, 472-478, 2007. |
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| N. Bagheri, J. Stelling and F.J. Doyle III, “Quantitative
Performance Metrics for Robustness in Circadian Rhythms”, Bioinformatics,
23, 358-364, 2007. |
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| T.L. To, M.A. Henson, E.D. Herzog, and F.J. Doyle III, “A
Molecular Model for Intercellular Synchronization in the Mammalian Circadian
Clock”, Biophys.
J., 92, 3792-3803, 2007. |
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| N. Padhiyar, A. Gupta, A. Gautam, S. Bhartiya, F.J. Doyle
III, S. Dash, and S. Gaikwad, “Nonlinear Inferential Control of Kappa
Number At Multiple Locations in A Continuous Pulp Digester”, J.
Process Control, 16, 1037-1053, 2006. |
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| C. Palerm, H. Zisser, L. Jovanovic, and F.J. Doyle III, “A
Run-to-Run Framework for Prandial Insulin Dosing: Handling Real-life Uncertainty”, Int.
J. Robust Nonlinear Control, 17, 1194-1213, 2007 . |
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