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Journal Articles
| C.A. Boch, B. Ananthasubramaniam, A. Sweeney, F.J. Doyle III, D.E. Morse "Effects of light dynamics on coral spawning synchrony," Biological Bulletin, vol. 220, pp. 161--173, June 2011.[DOI] |
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| C. Luni, F.J. Doyle III "Robust multi-drug therapy design and application to insulin resistance in type 2 diabetes," International Journal of Robust and Nonlinear Control, vol.21, pp.1730--1741, October 2011.[DOI] |
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| Y.Q. Wang, F.J. Doyle III "On influences of global and local cues on the rate of synchronization of oscillator networks," Automatica, vol. 47, no. 6, June 2011.[DOI] |
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| T.M Yuraszeck, P. Neveu, M. Rodriguez, A. Robinson, K.S. Kosik, F.J. Doyle III "Vulnerabilities in the Tau Network and the Role of Ultrasensitive Points in Tau Pathophysiology," PLoS Comput Biol, vol. 6, no. 11, November 2010.[DOI] |
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| C. Luni, J.E. Shoemaker, K.R. Sanft, L.R. Petzold, F.J. Doyle III, "Confidence from uncertainty - A multi-target drug screening method from robust control theory," BMC Systems Biology, vol. 4, no. 1, pp. 161, November 2010.[DOI] |
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| C. Luni, F.J. Doyle III, N. Elvassore, "Cell population modeling describes intrinsic heterogeneity: hematopoietic stem cells, a case study," IET Systems Biology, vol. 4, no. 161, November 2010.[DOI] |
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| J.E. Shoemaker, K. Gayen, N. Garcia-Reyero, E.J. Perkins, D.L. Villeneuve, L. Liu, F.J. Doyle III, "Fathead Minnow Steroidogenesis: in silico Analyses Reveals Tradeoffs Between Nominal Target Efficacy and Robustness to Cross-talk," BMC Systems Biology, June 2010.[DOI] |
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| B. Ananthasubramaniam, R.M. Nisbet, D.E. Morse, F.J. Doyle III, "Integrate-and-fire models of insolation-driven entrainment of broadcast spawning in corals ," Theoretical Ecology, vol. 4, no. 1, pp. 69--85, February 2011.[DOI] |
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| B. Grosman, E. Dassau, H. Zisser, L. Jovanovic, F.J. Doyle III, "Zone-Model Predictive Control: A Strategy to Minimize Hyper- and Hypo-glycemic Events," J Diabetes Sci Technol, vol. 4, no. 4, pp. 961--975, July 2010.[DOI] |
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| E. Dassau, F. Cameron, H. Lee, B.W. Bequette, H. Zisser, L. Jovanovic, H.P. Chase, D.M. Wilson, B.A. Buckingham, F.J. Doyle III, "Real-Time Hypoglycemia Prediction Suite Using Continuous Glucose Monitoring: A safety net for the artificial pancreas," Diabetes Care, vol. 33, no. 6, pp. 1013--1017, June 2010.[DOI] |
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| Y. Wang, H. Zisser, E. Dassau, L. Jovanovic, F.J. Doyle III, "Model Predictive Control with Learning-Type Set-point:Application to Artificial Pancreatic β-Cell ," AIChE Journal, vol. 56, no. 6, pp. 1510--1518, June 2010.[DOI] |
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| B.A. Buckingham, H.P. Chase, E. Dassau, E. Corby, P. Clinton, V. Gage, K. Caswell, J. Wilkinson, F. Cameron, H. Lee, B.W. Bequette, F.J. Doyle III, "Prevention of Nocturnal Hypoglycemia Using Predictive Alarm Algorithms and Insulin Pump Suspension," Diabetes Care, vol. 33, no. 5, pp. 1013--1017, May 2010.[DOI] |
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| S.R. Taylor, A.B. Webb, K.S. Smith, L.R. Petzold, F.J. Doyle III, "Velocity Response Curves Support the Role of Continuous Entrainment in Circadian Clocks," J Biol Rhythms, vol. 25, no. 2, pp. 138--149, April 2010.[DOI] |
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| R.A. Harvey, Y. Wang, B. Grosman, M.W. Percival, W. Bevier, D.A. Finan, H. Zisser, D.E. Seborg, L. Jovanovic, F.J. Doyle III, E. Dassau, "Quest for the Artificial Pancreas: Combining Technology with Treatment," Engineering in Medicine and Biology Magazine, IEEE, vol. 29, no. 2, pp. 53--62, March -- April 2010.[DOI] |
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| Y. Wang, E. Dassau, F.J. Doyle III, "Closed-Loop Control of Artificial Pancreatic β-Cell in Type 1 Diabetes Mellitus Using Model Predictive Iterative Learning Control," Biomedical Engineering, IEEE Transactions on, vol. 57, no. 2, pp. 211--219, February 2010.[DOI] |
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| Y. Wang, F. Gao, F.J. Doyle III, "Survey on Iterative Learning Control, Repetitive Control, and Run-to-Run Control," J Proc Cont, vol. 19, no. 10, pp. 1589--1600, December 2009.[DOI] |
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| Y. Wang, M.W. Percival, E. Dassau, H.C. Zisser, L. Jovanovic, F.J. Doyle III, "A Novel Adaptive Basal Therapy Based on the Value and Rate of Change of Blood Glucose," J Diabetes Sci Technol, vol. 3, pp. 1099--1108, September 2009.[DOI] |
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| H. P. Mirsky, A. C. Liu, D. K. Welsh, S. A. Kay, and F. J. Doyle III, "A model of the cell-autonomous mammalian circadian clock," Proc Natl Acad Sci USA, vol. 106, pp. 11107--11112, June 2009.[DOI] |
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| M. W. Percival, E. Dassau, H. Zisser, L. Jovanovic, and F. J. Doyle III, "Practical approach to design and implementation of a control algorithm in an artificial pancreatic β-cell," Ind Eng Chem Res, vol. 48, pp. 6059--6067, April 2009.[DOI] |
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| C. F. W. Sanders, M. J. Hounslow, and F. J. Doyle III, "Identification of models for control of wet granulation," Powder Technology, vol. 188, pp. 255--263, January 2009.[DOI] |
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| R. Ramachandran, J. M. H. Poon, C. F. W. Sanders, T. Glaser, C. D. Immanuel, F. J. Doyle III, J. D. Litster, F. Stepanek, F.-Y. Wang, and I. T. Cameron, "Experimental studies on distributions of granule size, binder content and porosity in batch drum granulation: Inferences on process modelling requirements and process sensitivities," Powder Technology, vol. 188, pp. 89--101, December 2008.[DOI] |
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| M. T. Dokucu and F. J. Doyle III, "Batch-to-batch control of characteristic points on the PSD in experimental emulsion polymerization," AIChE Journal, vol. 54, pp. 3171--3187, December 2008.[DOI] |
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S. Hildebrandt, D. Raden, L. Petzold, A. S. Robinson, and F. J. Doyle III, "A Top-Down Approach to Mechanistic Biological Modeling: Application to the Single-Chain Antibody Folding Pathway," vol. 95, pp. 3535--3558, October 2008.[DOI]
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| N. Bagheri, S. R. Taylor, K. Meeker, L. R. Petzold, and F. J. Doyle III, "Synchrony and entrainment properties of robust circadian oscillators," J R Soc Interface, vol. 5 Suppl 1, pp. S17-28--S17-28, August 2008.[DOI] |
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| N. Bagheri, J. Stelling, and F. J. Doyle III, "Circadian Phase Resetting via Single and Multiple Control Targets," PLoS Comput Biol, vol. 4, pp. e1000104--e1000104, July 2008.[DOI] |
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| M. W. Percival, H. Zisser, L. Jovanovic, and F. J. Doyle III, "Closed-loop control and advisory mode evaluation of an artificial pancreatic β-cell: use of proportional-integral-derivative equivalent model-based controllers," J Diabetes Sci Technol, vol. 2, pp. 636--644, July 2008.[DOI] |
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| J. M. H. Poon, C. D. Immanuel, F. J. Doyle III, and J. D. Litster, "A three-dimensional population balance model of granulation with a mechanistic representation of the nucleation and aggregation phenomena," Chemical Engineering Science, vol. 63, pp. 1315--1329, March 2008.[DOI] |
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M. T. Dokucu, M.-J. Park, and F. J. Doyle III, "Reduced-order methodologies for feedback control of particle size distribution in semi-batch emulsion copolymerization," Chemical Engineering Science, vol. 63, pp. 1230--1245, March 2008.[DOI]
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| C. C. Palerm, H. Zisser, L. Jovanovi, and F. J. Doyle III, "A Run-to-Run Control Strategy to Adjust Basal Insulin Infusion Rates in Type 1 Diabetes," J Process Control, vol. 18, pp. 258--265, March 2008. [DOI] |
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| M. A. Pinto, C. D. Immanuel, and F. J. Doyle III, "A two-level discretisation algorithm for the efficient solution of higher-dimensional population balance models," Chemical Engineering Science, vol. 63, pp. 1304--1314, March 2008.[DOI] |
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| E. Dassau, B. W. Bequette, B. A. Buckingham, and F. J. Doyle III, "Detection of a Meal Using Continuous Glucose Monitoring: Implications for an artificial β-cell," Diabetes Care, vol. 31, pp. 295--300, February 2008.[DOI] |
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| S. R. Taylor, R. Gunawan, L. R. Petzold, and F. J. Doyle III, "Sensitivity Measures for Oscillating Systems: Application to Mammalian Circadian Gene Network," Automatic Control, IEEE Transactions on, vol. 53, pp. 177--188, January 2008.[DOI] |
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| M. T. Dokucu, M.-J. Park, and F. J. Doyle III, "Multi-rate model predictive control of particle size distribution in a semibatch emulsion copolymerization reactor," Journal of Process Control, vol. 18, pp. 105--120, January 2008.[DOI] |
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| M. A. Pinto, C. D. Immanuel, and F. J. Doyle III, "A feasible solution technique for higher-dimensional population balance models," Computers & Chemical Engineering, vol. 31, pp. 1242--1256, October 2007.[DOI] |
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| T.-L. To, M. A. Henson, E. D. Herzog, and F. J. Doyle III, "A Molecular Model for Intercellular Synchronization in the Mammalian Circadian Clock," Biophys J., vol. 92, pp. 3792?3803--3792?3803, June 2007.[DOI]. |
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| M. J. Park, F. W. Dahlquist, and F. J. Doyle III, "Simultaneous high gain and wide dynamic range in a model of bacterial chemotaxis," Systems Biology, IET, vol. 1, pp. 222--229, 2007.[DOI] |
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| C. C. Palerm, H. Zisser, L. Jovanovic, and F. J. Doyle III, "A run-to-run framework for prandial insulin dosing: handling real-life uncertainty," International Journal of Robust and Nonlinear Control, vol. 17, pp. 1194--1213, 2007.[DOI] |
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| C. C. Palerm, H. Zisser, W. C. Bevier, L. Jovanovic, and F. J. Doyle III, "Prandial Insulin Dosing Using Run-to-Run Control: Application of clinical data and medical expertise to define a suitable performance metric," Diabetes Care, vol. 30, pp. 1131--1136, May 2007.[DOI] |
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| A. C. Liu, D. K. Welsh, C. H. Ko, H. G. Tran, E. E. Zhang, A. A. Priest, E. D. Buhr, O. Singer, K. Meeker, I. M. Verma, F. J. Doyle III, J. S. Takahashi, and S. A. Kay, "Intercellular Coupling Confers Robustness against Mutations in the SCN Circadian Clock Network," Cell, vol. 129, pp. 605--616, May 2007.[DOI] |
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| R. E. Kronauer, G. Gunzelmann, H. P. A. Van Dongen, F. J. Doyle III, and E. B. Klerman, "Uncovering Physiologic Mechanisms of Circadian Rhythms and Sleep/Wake Regulation through Mathematical Modeling," J Biol Rhythms, vol. 22, pp. 233--245, June 2007.[DOI] |
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| R. Gunawan and F. J. Doyle III, "Phase Sensitivity Analysis of Circadian Rhythm Entrainment," J Biol Rhythms, vol. 22, pp. 180--194, April 2007.[DOI] |
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| W. C. Bevier, H. Zisser, C. C. Palerm, D. A. Finan, D. E. Seborg, F. J. Doyle III, A. O. Wollitzer, Jovanovi, ccaron, and Lois, "Calculating the insulin to carbohydrate ratio using the hyperinsulinaemic-euglycaemic clamp?-?a novel use for a proven technique," Diabetes/Metabolism Research and Reviews, vol. 23, pp. 472--478, 2007.[DOI] |
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| N. Bagheri, J. Stelling, and F. J. Doyle III, "Quantitative performance metrics for robustness in circadian rhythms," Bioinformatics, vol. 23, pp. 358--364, February 2007.[DOI] |
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| N. Bagheri, J. Stelling, and F. J. Doyle III, "Circadian phase entrainment via nonlinear model predictive control," International Journal of Robust and Nonlinear Control, vol. 17, pp. 1555--1571, 2007.[DOI] |
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| N. Padhiyar, A. Gupta, A. Gautam, S. Bhartiya, F. J. Doyle III, S. Dash, and S. Gaikwad, "Nonlinear inferential multi-rate control of Kappa number at multiple locations in a continuous pulp digester," Journal of Process Control, vol. 16, pp. 1037--1053, December 2006.[DOI] |
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